Github Gatk. broadinstitute / GATK-gCNV-publication Public Notifications You must

broadinstitute / GATK-gCNV-publication Public Notifications You must be signed in to change notification settings Fork 2 Star 11 This WDL pipeline implements data pre-processing and initial variant calling (GVCF generation) according to the GATK Best Practices (June 2016) for germline SNP and Indel discovery in human whole-genome sequencing data. If you don't yet know for sure you're actually going to use GATK for your work, then you should consider test-driving the software without having to do any real work yourself. 7 MuTect2. The haplotypecaller-vcf-gatk3 workflow runs HaplotypeCaller from GATK3 in VCF mode on a single sample according to the GATK Best Practices (June 2016), scattered across intervals. The intention is that these WDLs can be imported as tasks into larger workflows consisting of multiple tools run as a pipeline. I cannot use conda. This repository contains the next generation of the Genome Analysis Toolkit (GATK). May 20, 2025 · For GitHub basics, see here. . Contribute to broadinstitute/gatk-native-bindings development by creating an account on GitHub. tnewwj
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